The undulator system in the European XFEL is mainly comprised 5-m long undulator segments and 1.1 m long intersections in between. In intersections the electron velocity is faster than it inside an undulator and the optical phase is detuned. The detune effect is also from the undulator fringe field where electron longitudinal speed also deviates from the oscillation condition. The total detune effect is compensated by a magnetic device called phase shifter, which is correspondingly set for a specific undulator gap. In this paper we introduce the method to set the phase shifter gap for each K parameter according to the measured magnetic field. Proceedings of the 60th ICFA Advanced Beam Dynamics Workshop on Future Light Sources, FLS2018, Shanghai, China